Recent Papers |
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2010 |
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Ivo L. Hofacker, Christian M. Reidys, Peter F. Stadler |
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The evolution of the random reversal graph |
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Christian M. Reidys and Emma Y. Jin |
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Supplement |
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2009 |
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Random induced subgraphs of Cayley graphs induced by transpositions |
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Emma Y. Jin and Christian M. Reidys |
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Loops in canonical RNA pseudoknot structures |
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Markus E. Nebel, Christian M. Reidys, and Rita R. Wang |
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Random 3-noncrossing Partitions |
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Jing Qin and Christian M. Reidys |
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Supplement |
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Shapes of RNA pseudoknot structures |
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Christian M. Reidys and Rita R. Wang |
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Supplement |
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Inverse Folding of RNA Pseudoknot Structures |
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James Z.M. Gao, Linda Y.M. Li and C.M. Reidys |
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2008 |
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Asymptotic Analysis of $k$-noncrossing Matchings |
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Emma Y. Jin, C.M. Reidys, Rita R. Wang |
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Published Papers |
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2009 |
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Target prediction and a statistical sampling algorithm for
RNA-RNA interaction |
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Fenix W.D. Huang, Jing Qin, C.M. Reidys and P.F. Stadler |
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Bioinformatics, to appear |
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Supplement |
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Random k-noncrossing RNA Structures |
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William Y. C. Chen, Hilary S.W. Han and C.M.Reidys |
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Proceedings of the National Academy of Sciences, to appear |
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Supplement |
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RNA-RNA Interaction Predition: Partition function and base pair pairing probabilities |
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Fenix W.D. Huang, Jing Qin, C.M. Reidys and P.F. Stadler |
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Bioinformatics, to appear |
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Irreduciblity in RNA structures |
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Emma Y. Jin and C.M. Reidys |
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Bulletin of Mathematical Biology, to appear |
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RNA Pseudoknots Structures With Arc-length≥ 3 and
Stack-length ≥ σ |
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Emma Y. Jin and C.M. Reidys |
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Discrete Applied Mathematics, to appear |
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Supplementary material |
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Folding 3-Noncrossing RNA Pseudoknot Structures |
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Fenix W.D. Huang, Wade W.J. Peng and C. M. Reidys |
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Journal of Computational Biology, to appear. |
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On the decomposition of k-noncrossing RNA Structures |
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Emma Y. Jin and C.M. Reidys |
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Advances in Applied Mathematics , to appear. |
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Efficient Counting and Asymptotics of $k$-noncrossing tangled-diagrams |
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Jing Qin and C.M. Reidys |
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Electronic Journal of Combinatorics 16 (2009), #37. |
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Stacks in canonical RNA pseudoknot structures |
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Hilary S.W. Han and C.M.Reidys |
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Mathematical Biosciences, Volume 219, Issue 1, May 2009, Pages 7-14 |
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Large components in random induced subgraphs of N-cubes (updated version) |
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C.M.Reidys |
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Discrete Mathematics Volume 309, Issue 10, 28 May 2009, Pages 3113-3124. |
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2008 |
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Sequence-structure relations of pseudoknot RNA |
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Fenix W.D. Huang, Linda Y.M. Li and C. M. Reidys |
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BMC Bioinformatics, (10), Suppl 1, S39. |
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Local Connectivity of Neutral Networks |
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C.M. Reidys |
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Bulletin of Mathematical Biology, (71), 265-290. |
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Canonical RNA Pseudoknot Structures |
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Gang Ma and C.M.Reidys |
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Journal of Computational Biology, (15), 1257-1273.. |
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Crossing and Nesting of Tangled-diagrams |
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William Y. C. Chen, Jing Qin and C.M. Reidys |
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Electronic Journal of Combinatorics 15 (2008), #86. |
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Combinatorial Design Of Pseudoknot RNA |
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Emma Y. Jin, C.M. Reidys |
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Advances in Applied Mathematics , (42) 135-151. |
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Statistics Of Stable RNA Pseudoknot Structures |
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Fenix W.D. Huang , C.M. Reidys |
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Journal of Theoretical Biology, (253),
570-578. |
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Pseudoknot RNA structures with arc-length $\ge 4$ |
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Hillary S.W. Han , C. M. Reidys |
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Journal of Computational Biology, (15), 1195-1208. |
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| 2007 |
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Combinatorics Of RNA Structures With Pseudoknots |
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Emma Y. Jin, Jing Qin, and C.M. Reidys |
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Bulletin of Mathematical Biology (2008) 70: 45–67. |
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Asymptotic Enumeration of RNA Structures With Pseudoknots
(Lee Segel prize, 2008) |
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Emma Y. Jin, C.M. Reidys |
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Bulletin of Mathematical Biology (2008) 70: 951-970. |
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Central and Local Limit Theorems for RNA Structures |
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Emma Y. Jin, C.M. Reidys |
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Journal of Theoretical Biology(2008), 250(3), 547-559. |
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Neutral networks of sequence to shape maps |
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Emma Y. Jin, Jing Qin, and C.M. Reidys |
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Journal of Theoretical Biology(2008), 250(3), 484-497. |
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Combinatorics of Sequential Dynamical Systems |
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C.M. Reidys |
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Discrete Mathematics(2008), 514-528. |
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Sequential Dynamical Systems over Words |
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C.M. Reidys |
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Annals of Combinatorics(2006), 10, 481-498. |
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