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Computational Biology, Probability and Combinatorics
Recent Papers
 
2008
 
  Stacks in canonical RNA pseudoknot structures  
  Hilary S.W. Han and C.M.Reidys  
     
  Canonical RNA Pseudoknot Structures  
  Gang Ma and C.M.Reidys  
     
  Local Connectivity of Neutral Networks  
  C.M. Reidys  
     
  Asymptotic Analysis of $k$-noncrossing Matchings  
  Emma Y. Jin, C.M. Reidys, Rita R. Wang  
     
  Efficient Counting and Asymptotics of $k$-noncrossing tangled-diagrams  
  William Y. C. Chen, Jing Qin, C.M. Reidys and Doron Zeilberger  
     
2007
 
  RNA Pseudoknots Structures With Arc-length¡Ý 3 and Stack-length ¡Ý ¦Ò  
  Emma Y. Jin and C.M. Reidys  
     
  A combinatorial framework for RNA tertiary interaction  
  Jing Qin and C.M. Reidys  
     
     
Published Papers
 
2008
 
  Crossing and Nesting of Tangled-diagrams  
  William Y. C. Chen, Jing Qin and C.M. Reidys  
  Electronic Journal of Combinatorics 15 (2008), #86.  
     
  RNA-Lego: Combinatorial Design Of Pseudoknot RNA  
  Emma Y. Jin, C.M. Reidys  
  Advances in Applied Mathematics , to appear.  
   
Statistics Of Stable RNA Pseudoknot Structures  
  Fenix W.D. Huang , C.M. Reidys  
  Journal of Theoretical Biology, to appear.  
     
Pseudoknot RNA structures with arc-length $\ge 4$  
  Hillary S.W. Han , C. M. Reidys  
  Journal of Computational Biology, to appear.  
     
2007  
  Combinatorics Of RNA Structures With Pseudoknots  
  Emma Y. Jin, Jing Qin, and C.M. Reidys  
  Bulletin of Mathematical Biology (2008) 70: 45¨C67.  
     
  Asymptotic Enumeration of RNA Structures With Pseudoknots  
  Emma Y. Jin, C.M. Reidys  
  Bulletin of Mathematical Biology (2008) 70: 951-970.  
     
  Central and Local Limit Theorems for RNA Structures  
  Emma Y. Jin, C.M. Reidys  
  Journal of Theoretical Biology(2008), 250(3), 547-559.  
     
  Neutral networks of sequence to shape maps  
  Emma Y. Jin, Jing Qin, and C.M. Reidys  
  Journal of Theoretical Biology(2008), 250(3), 484-497.  
     
  Combinatorics of Sequential Dynamical Systems  
  C.M. Reidys  
  Discrete Mathematics(2008), 514-528.  
     
  Sequential Dynamical Systems over Words  
  C.M. Reidys  
  Annals of Combinatorics(2006), 10, 481-498.