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Computational Biology, Probability and Combinatorics
Recent Papers
 
2009
 
  Random k-noncrossing RNA Structures  
  Hilary S.W. Han and C.M.Reidys  
     
  Shapes of RNA pseudoknot structures  
  Christian M. Reidys and Rita R. Wang  
     
  Inverse Folding of RNA Pseudoknot Structures  
  James Z.M. Gao, Linda Y.M. Li and C.M. Reidys  
     
  RNA-RNA Interaction Predition: Partition function and base pair pairing probabilities  
  Fenix W.D. Huang, Jing Qin, C.M. Reidys and P.F. Stadler  
     
  Irreduciblity in RNA structures  
  Emma Y. Jin and C.M. Reidys  
     
2008
 
  Asymptotic Analysis of $k$-noncrossing Matchings  
  Emma Y. Jin, C.M. Reidys, Rita R. Wang  
     
2007
 
  A combinatorial framework for RNA tertiary interaction  
  Jing Qin and C.M. Reidys  
     
     
Published Papers
 
2009
 
  RNA Pseudoknots Structures With Arc-length≥ 3 and Stack-length ≥ σ  
  Emma Y. Jin and C.M. Reidys  
  Discrete Applied Mathematics, to appear  
     
  Folding 3-Noncrossing RNA Pseudoknot Structures  
  Fenix W.D. Huang, Wade W.J. Peng and C. M. Reidys  
  Journal of Computational Biology, to appear.  
     
  On the decomposition of k-noncrossing RNA Structures  
  Emma Y. Jin and C.M. Reidys  
  Advances in Applied Mathematics , to appear.  
     
  Efficient Counting and Asymptotics of $k$-noncrossing tangled-diagrams  
  Jing Qin and C.M. Reidys  
  Electronic Journal of Combinatorics 16 (2009), #37.  
     
  Stacks in canonical RNA pseudoknot structures  
  Hilary S.W. Han and C.M.Reidys  
  Mathematical Biosciences, Volume 219, Issue 1, May 2009, Pages 7-14  
2008
 
  Sequence-structure relations of pseudoknot RNA  
  Fenix W.D. Huang, Linda Y.M. Li and C. M. Reidys  
  BMC Informatics, (10), Suppl 1, S39.  
     
  Local Connectivity of Neutral Networks  
  C.M. Reidys  
  Bulletin of Mathematical Biology, (71), 265-290.  
     
  Large components in random induced subgraphs of N-cubes  
  C.M.Reidys  
  Discrete Mathmatics , to appear.  
     
  Canonical RNA Pseudoknot Structures  
  Gang Ma and C.M.Reidys  
  Journal of Computational Biology, (15), 1257-1273..  
     
  Crossing and Nesting of Tangled-diagrams  
  William Y. C. Chen, Jing Qin and C.M. Reidys  
  Electronic Journal of Combinatorics 15 (2008), #86.  
     
  Combinatorial Design Of Pseudoknot RNA  
  Emma Y. Jin, C.M. Reidys  
  Advances in Applied Mathematics , (42) 135-151.  
   
Statistics Of Stable RNA Pseudoknot Structures  
  Fenix W.D. Huang , C.M. Reidys  
  Journal of Theoretical Biology, (253), 570-578.  
     
Pseudoknot RNA structures with arc-length $\ge 4$  
  Hillary S.W. Han , C. M. Reidys  
  Journal of Computational Biology, (15), 1195-1208.  
     
2007  
  Combinatorics Of RNA Structures With Pseudoknots  
  Emma Y. Jin, Jing Qin, and C.M. Reidys  
  Bulletin of Mathematical Biology (2008) 70: 45¨C67.  
     
 

Asymptotic Enumeration of RNA Structures With Pseudoknots

(Lee Segel prize, 2008)

 
  Emma Y. Jin, C.M. Reidys  
  Bulletin of Mathematical Biology (2008) 70: 951-970.  
     
  Central and Local Limit Theorems for RNA Structures  
  Emma Y. Jin, C.M. Reidys  
  Journal of Theoretical Biology(2008), 250(3), 547-559.  
     
  Neutral networks of sequence to shape maps  
  Emma Y. Jin, Jing Qin, and C.M. Reidys  
  Journal of Theoretical Biology(2008), 250(3), 484-497.  
     
  Combinatorics of Sequential Dynamical Systems  
  C.M. Reidys  
  Discrete Mathematics(2008), 514-528.  
     
  Sequential Dynamical Systems over Words  
  C.M. Reidys  
  Annals of Combinatorics(2006), 10, 481-498.